Detailed information of SNP:
|
SNP ID:
sf0222953347(Gbrowse)
Chromosome: chr02 Position: 22953347 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 94.28% | 5.72% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 65 | 52.31% | 47.69% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222953347 | A->G | LOC_Os02g38000(LOC_Os02g38000.1) | Non-Synonymous SNP |