Detailed information of SNP:
|
SNP ID:
sf0222955317(Gbrowse)
Chromosome: chr02 Position: 22955317 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 96.19% | 3.81% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222955317 | A->G | LOC_Os02g38000(LOC_Os02g38000.1) | Non-Synonymous SNP |