Detailed information of SNP:
|
SNP ID:
sf0222976537(Gbrowse)
Chromosome: chr02 Position: 22976537 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 85.54% | 14.46% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 491 | 70.67% | 29.33% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 333 | 83.78% | 16.22% |
| Tropical Japonica | 92 | 39.13% | 60.87% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222976537 | T->G | LOC_Os02g38050(LOC_Os02g38050.3) | Non-Synonymous SNP |
| sf0222976537 | T->G | LOC_Os02g38050(LOC_Os02g38050.1) | Non-Synonymous SNP |
| sf0222976537 | T->G | LOC_Os02g38050(LOC_Os02g38050.4) | Non-Synonymous SNP |
| sf0222976537 | T->G | LOC_Os02g38050(LOC_Os02g38050.6) | UTR_3_PRIME |
| sf0222976537 | T->G | LOC_Os02g38050(LOC_Os02g38050.2) | Non-Synonymous SNP |
| sf0222976537 | T->G | LOC_Os02g38050(LOC_Os02g38050.5) | UTR_3_PRIME |