Detailed information of SNP:



SNP ID: sf0223001139(Gbrowse)

Chromosome: chr02

Position: 23001139
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1418 97.88% 2.12%
All Indica798 96.37% 3.63%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II212 88.68% 11.32%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0223001139 T->A INTERGENIC None