Detailed information of SNP:
|
SNP ID:
sf0223021373(Gbrowse)
Chromosome: chr02 Position: 23021373 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 90.85% | 9.15% |
| All Indica | 783 | 84.16% | 15.84% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 78.05% | 21.95% |
| Indica II | 207 | 90.34% | 9.66% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223021373 | G->A | INTERGENIC | None |