Detailed information of SNP:
|
SNP ID:
sf0223028082(Gbrowse)
Chromosome: chr02 Position: 23028082 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.95% | 43.05% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223028082 | G->A | INTERGENIC | None |