Detailed information of SNP:
|
SNP ID:
sf0223031122(Gbrowse)
Chromosome: chr02 Position: 23031122 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 65.63% | 34.37% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 492 | 19.92% | 80.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 89 | 68.54% | 31.46% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223031122 | G->A | INTERGENIC | None |