Detailed information of SNP:
|
SNP ID:
sf0223032364(Gbrowse)
Chromosome: chr02 Position: 23032364 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1305 | 50.42% | 49.58% |
| All Indica | 696 | 86.35% | 13.65% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 60 | 51.67% | 48.33% |
| Indica I | 331 | 81.27% | 18.73% |
| Indica II | 180 | 95.56% | 4.44% |
| Indica Intermediate | 185 | 86.49% | 13.51% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223032364 | G->A | LOC_Os02g38110(LOC_Os02g38110.1) | Synonymous |