Detailed information of SNP:
|
SNP ID:
sf0223032536(Gbrowse)
Chromosome: chr02 Position: 23032536 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 55.63% | 44.37% |
| All Indica | 795 | 87.55% | 12.45% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223032536 | G->A | INTERGENIC | None |