Detailed information of SNP:
|
SNP ID:
sf0223033828(Gbrowse)
Chromosome: chr02 Position: 23033828 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.60% | 42.40% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223033828 | A->G | INTERGENIC | None |