Detailed information of SNP:
|
SNP ID:
sf0223037301(Gbrowse)
Chromosome: chr02 Position: 23037301 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.90% | 45.10% |
| All Indica | 798 | 88.97% | 11.03% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223037301 | G->A | INTERGENIC | None |