Detailed information of SNP:
|
SNP ID:
sf0223037311(Gbrowse)
Chromosome: chr02 Position: 23037311 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.28% | 42.72% |
| All Indica | 796 | 89.82% | 10.18% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 84.99% | 15.01% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223037311 | A->G | INTERGENIC | None |