Detailed information of SNP:
|
SNP ID:
sf0223037381(Gbrowse)
Chromosome: chr02 Position: 23037381 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 63.40% | 36.60% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 453 | 9.49% | 90.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 327 | 2.45% | 97.55% |
| Tropical Japonica | 67 | 38.81% | 61.19% |
| Japonica Intermediate | 59 | 15.25% | 84.75% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223037381 | T->C | INTERGENIC | None |