Detailed information of SNP:
|
SNP ID:
sf0223043021(Gbrowse)
Chromosome: chr02 Position: 23043021 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.42% | 49.58% |
| All Indica | 798 | 20.18% | 79.82% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 212 | 27.36% | 72.64% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223043021 | G->A | INTERGENIC | None |