Detailed information of SNP:
|
SNP ID:
sf0223043953(Gbrowse)
Chromosome: chr02 Position: 23043953 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.91% | 48.09% |
| All Indica | 796 | 22.36% | 77.64% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 19.20% | 80.80% |
| Indica II | 210 | 29.52% | 70.48% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223043953 | T->C | INTERGENIC | None |