Detailed information of SNP:
|
SNP ID:
sf0223045307(Gbrowse)
Chromosome: chr02 Position: 23045307 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 53.90% | 46.10% |
| All Indica | 792 | 21.84% | 78.16% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 371 | 18.60% | 81.40% |
| Indica II | 211 | 28.44% | 71.56% |
| Indica Intermediate | 210 | 20.95% | 79.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223045307 | G->A | INTERGENIC | None |