Detailed information of SNP:
|
SNP ID:
sf0223045575(Gbrowse)
Chromosome: chr02 Position: 23045575 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 53.64% | 46.36% |
| All Indica | 795 | 21.64% | 78.36% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 373 | 19.03% | 80.97% |
| Indica II | 211 | 27.49% | 72.51% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223045575 | A->G | INTERGENIC | None |