Detailed information of SNP:
|
SNP ID:
sf0223047961(Gbrowse)
Chromosome: chr02 Position: 23047961 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 59.16% | 40.84% |
| All Indica | 794 | 39.04% | 60.96% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 207 | 30.43% | 69.57% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223047961 | A->G | INTERGENIC | None |