Detailed information of SNP:
|
SNP ID:
sf0223057019(Gbrowse)
Chromosome: chr02 Position: 23057019 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 76.60% | 23.40% |
| All Indica | 799 | 65.46% | 34.54% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223057019 | T->G | LOC_Os02g38130(LOC_Os02g38130.1) | UTR_3_PRIME |