Detailed information of SNP:
|
SNP ID:
sf0223061276(Gbrowse)
Chromosome: chr02 Position: 23061276 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 59.34% | 40.66% |
| All Indica | 796 | 91.83% | 8.17% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223061276 | C->T | INTERGENIC | None |