Detailed information of SNP:
|
SNP ID:
sf0223063136(Gbrowse)
Chromosome: chr02 Position: 23063136 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 90.51% | 9.49% |
| All Indica | 789 | 88.34% | 11.66% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 61 | 60.66% | 39.34% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 210 | 76.67% | 23.33% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223063136 | G->A | INTERGENIC | None |