Detailed information of SNP:
|
SNP ID:
sf0223066891(Gbrowse)
Chromosome: chr02 Position: 23066891 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 57.10% | 42.90% |
| All Indica | 689 | 29.17% | 70.83% |
| All Japonica | 477 | 98.53% | 1.47% |
| Aus | 63 | 41.27% | 58.73% |
| Indica I | 316 | 17.41% | 82.59% |
| Indica II | 195 | 40.00% | 60.00% |
| Indica Intermediate | 178 | 38.20% | 61.80% |
| Temperate Japonica | 325 | 99.38% | 0.62% |
| Tropical Japonica | 87 | 96.55% | 3.45% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223066891 | T->A | INTERGENIC | None |