Detailed information of SNP:
|
SNP ID:
sf0223068177(Gbrowse)
Chromosome: chr02 Position: 23068177 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1220 | 90.08% | 9.92% |
| All Indica | 785 | 99.62% | 0.38% |
| All Japonica | 317 | 64.35% | 35.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 99.45% | 0.55% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 221 | 59.28% | 40.72% |
| Tropical Japonica | 57 | 73.68% | 26.32% |
| Japonica Intermediate | 39 | 79.49% | 20.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223068177 | T->C | LOC_Os02g38150(LOC_Os02g38150.1) | INTRON |