Detailed information of SNP:
|
SNP ID:
sf0223070462(Gbrowse)
Chromosome: chr02 Position: 23070462 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.12% | 35.88% |
| All Indica | 796 | 43.47% | 56.53% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 30.75% | 69.25% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223070462 | G->A | INTERGENIC | None |