Detailed information of SNP:
|
SNP ID:
sf0223071785(Gbrowse)
Chromosome: chr02 Position: 23071785 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.71% | 37.29% |
| All Indica | 796 | 41.21% | 58.79% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 372 | 31.18% | 68.82% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223071785 | C->T | INTERGENIC | None |