Detailed information of SNP:
|
SNP ID:
sf0223071838(Gbrowse)
Chromosome: chr02 Position: 23071838 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.34% | 42.66% |
| All Indica | 796 | 80.90% | 19.10% |
| All Japonica | 497 | 20.72% | 79.28% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 23.58% | 76.42% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223071838 | T->C | INTERGENIC | None |