Detailed information of SNP:
|
SNP ID:
sf0223071952(Gbrowse)
Chromosome: chr02 Position: 23071952 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.95% | 37.05% |
| All Indica | 797 | 40.90% | 59.10% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 373 | 30.83% | 69.17% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223071952 | C->T | INTERGENIC | None |