Detailed information of SNP:
|
SNP ID:
sf0223072089(Gbrowse)
Chromosome: chr02 Position: 23072089 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.59% | 48.41% |
| All Indica | 795 | 23.40% | 76.60% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 372 | 19.62% | 80.38% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223072089 | G->A | INTERGENIC | None |