Detailed information of SNP:
|
SNP ID:
sf0223072098(Gbrowse)
Chromosome: chr02 Position: 23072098 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 60.44% | 39.56% |
| All Indica | 793 | 36.82% | 63.18% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 371 | 22.91% | 77.09% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223072098 | C->A | INTERGENIC | None |