Detailed information of SNP:
|
SNP ID:
sf0223072775(Gbrowse)
Chromosome: chr02 Position: 23072775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 55.83% | 44.17% |
| All Indica | 795 | 33.21% | 66.79% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 30.83% | 69.17% |
| Indica II | 212 | 36.32% | 63.68% |
| Indica Intermediate | 210 | 34.29% | 65.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223072775 | C->T | INTERGENIC | None |