Detailed information of SNP:
|
SNP ID:
sf0223073247(Gbrowse)
Chromosome: chr02 Position: 23073247 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 61.81% | 38.19% |
| All Indica | 783 | 39.97% | 60.03% |
| All Japonica | 479 | 99.16% | 0.84% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 368 | 30.43% | 69.57% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 202 | 35.15% | 64.85% |
| Temperate Japonica | 318 | 99.37% | 0.63% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223073247 | T->A | INTERGENIC | None |