Detailed information of SNP:
|
SNP ID:
sf0223083284(Gbrowse)
Chromosome: chr02 Position: 23083284 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.58% | 38.42% |
| All Indica | 797 | 34.13% | 65.87% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 19.20% | 80.80% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223083284 | T->A | INTERGENIC | None |