Detailed information of SNP:
|
SNP ID:
sf0223105616(Gbrowse)
Chromosome: chr02 Position: 23105616 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.29% | 42.71% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223105616 | T->C | INTERGENIC | None |