Detailed information of SNP:
|
SNP ID:
sf0223109330(Gbrowse)
Chromosome: chr02 Position: 23109330 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 70.19% | 29.81% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 489 | 20.65% | 79.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 18.98% | 81.02% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 63 | 28.57% | 71.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223109330 | A->C | INTERGENIC | None |