Detailed information of SNP:
|
SNP ID:
sf0223124903(Gbrowse)
Chromosome: chr02 Position: 23124903 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.21% | 46.79% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223124903 | G->A | INTERGENIC | None |