Detailed information of SNP:
|
SNP ID:
sf0223142126(Gbrowse)
Chromosome: chr02 Position: 23142126 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 93.50% | 6.50% |
| All Indica | 766 | 90.86% | 9.14% |
| All Japonica | 490 | 98.98% | 1.02% |
| Aus | 58 | 75.86% | 24.14% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 185 | 87.03% | 12.97% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 96.55% | 3.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223142126 | A->G | LOC_Os02g38280(LOC_Os02g38280.1) | INTRON |