Detailed information of SNP:
|
SNP ID:
sf0223157109(Gbrowse)
Chromosome: chr02 Position: 23157109 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.51% | 21.49% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 54.33% | 45.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 67.46% | 32.54% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223157109 | C->T | LOC_Os02g38300(LOC_Os02g38300.2) | INTRON |
| sf0223157109 | C->T | LOC_Os02g38300(LOC_Os02g38300.1) | INTRON |