Detailed information of SNP:
|
SNP ID:
sf0223160825(Gbrowse)
Chromosome: chr02 Position: 23160825 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.50% | 47.50% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223160825 | C->T | INTERGENIC | None |