Detailed information of SNP:
|
SNP ID:
sf0223162949(Gbrowse)
Chromosome: chr02 Position: 23162949 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.33% | 42.67% |
| All Indica | 799 | 84.11% | 15.89% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223162949 | G->A | INTERGENIC | None |