Detailed information of SNP:
|
SNP ID:
sf0223163411(Gbrowse)
Chromosome: chr02 Position: 23163411 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 50.46% | 49.54% |
| All Indica | 799 | 77.35% | 22.65% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223163411 | T->G | INTERGENIC | None |