Detailed information of SNP:
|
SNP ID:
sf0223164022(Gbrowse)
Chromosome: chr02 Position: 23164022 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.88% | 46.12% |
| All Indica | 799 | 59.07% | 40.93% |
| All Japonica | 497 | 49.09% | 50.91% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 65.67% | 34.33% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223164022 | A->G | INTERGENIC | None |