Detailed information of SNP:
|
SNP ID:
sf0223164278(Gbrowse)
Chromosome: chr02 Position: 23164278 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 60.48% | 39.52% |
| All Indica | 795 | 85.41% | 14.59% |
| All Japonica | 497 | 18.31% | 81.69% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 209 | 71.77% | 28.23% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223164278 | G->A | INTERGENIC | None |