Detailed information of SNP:
|
SNP ID:
sf0223164301(Gbrowse)
Chromosome: chr02 Position: 23164301 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 63.05% | 36.95% |
| All Indica | 766 | 89.43% | 10.57% |
| All Japonica | 496 | 18.35% | 81.65% |
| Aus | 59 | 93.22% | 6.78% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 183 | 85.25% | 14.75% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223164301 | T->G | INTERGENIC | None |