Detailed information of SNP:
|
SNP ID:
sf0223166079(Gbrowse)
Chromosome: chr02 Position: 23166079 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 91.07% | 8.93% |
| All Indica | 787 | 90.22% | 9.78% |
| All Japonica | 447 | 95.97% | 4.03% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 210 | 75.24% | 24.76% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 308 | 99.68% | 0.32% |
| Tropical Japonica | 78 | 83.33% | 16.67% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223166079 | C->T | INTERGENIC | None |