Detailed information of SNP:



SNP ID: sf0223166098(Gbrowse)

Chromosome: chr02

Position: 23166098
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 52.15% 47.85%
All Indica799 80.35% 19.65%
All Japonica497 4.63% 95.37%
Aus67 79.10% 20.90%
Indica I375 94.13% 5.87%
Indica II213 68.54% 31.46%
Indica Intermediate211 67.77% 32.23%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 20.21% 79.79%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 21.43% 78.57%
Intermediate42 45.24% 54.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0223166098 C->T INTERGENIC None