Detailed information of SNP:
|
SNP ID:
sf0223166357(Gbrowse)
Chromosome: chr02 Position: 23166357 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 60.94% | 39.06% |
| All Indica | 746 | 66.89% | 33.11% |
| All Japonica | 494 | 49.80% | 50.20% |
| Aus | 53 | 96.23% | 3.77% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 166 | 50.60% | 49.40% |
| Indica Intermediate | 205 | 59.02% | 40.98% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 92 | 4.35% | 95.65% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223166357 | G->A | INTERGENIC | None |