Detailed information of SNP:
|
SNP ID:
sf0223168807(Gbrowse)
Chromosome: chr02 Position: 23168807 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 94.18% | 5.82% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 402 | 81.09% | 18.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 249 | 73.09% | 26.91% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 85.00% | 15.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223168807 | G->T | LOC_Os02g38320(LOC_Os02g38320.1) | Non-Synonymous SNP |