Detailed information of SNP:
|
SNP ID:
sf0223169175(Gbrowse)
Chromosome: chr02 Position: 23169175 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.41% | 24.59% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 34.33% | 65.67% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223169175 | T->C | INTERGENIC | None |