Detailed information of SNP:
|
SNP ID:
sf0223170845(Gbrowse)
Chromosome: chr02 Position: 23170845 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.84% | 41.16% |
| All Indica | 799 | 34.29% | 65.71% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 14.40% | 85.60% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223170845 | A->G | INTERGENIC | None |