Detailed information of SNP:
|
SNP ID:
sf0223171876(Gbrowse)
Chromosome: chr02 Position: 23171876 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.75% | 29.25% |
| All Indica | 799 | 59.20% | 40.80% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223171876 | G->A | LOC_Os02g38340(LOC_Os02g38340.1) | UTR_5_PRIME |